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Parameter: ion_series_Z

Overview

Identifies whether or not to use this fragment ion series in the Xcorr analysis. Use of the ion series is turned on and off with a 1 or 0, respectively. Note that with the Z-ion series, Z-dot m/z values are used.

Syntax

[Number]

Versions

1.4.0 - present

Example

To enable use of the Z-ion series:

ion_series_Z = 1
Overview
General Info Sample Configuration File
Data I/O
database export_pepXML export_percolator MS_data_file percolator_version results_path split_pepxml
Data Descriptors
enrichment instrument MS1_centroid MS1_resolution MS2_centroid MS2_resolution
Cross-links
cross_link mono_link predefined_crosslink xl_cleavage_product_mass
Modifications
aa_mass diff_mods_on_xl fixed_modification fixed_modification_protC fixed_modification_protN max_mods_per_peptide modification modification_protC modification_protN mono_links_on_xl
Scoring Algorithm
fragment_bin_offset fragment_bin_size ion_series_A ion_series_B ion_series_C ion_series_X ion_series_Y ion_series_Z
Analysis
decoy_filter diagnostic e_value_depth enzyme isotope_error max_miscleavages max_peptide_mass max_spectrum_peaks min_peptide_mass min_peptide_score min_spectrum_peaks ppm_tolerance_pre precursor_refinement prefer_precursor_pred spectrum_processing threads top_count truncate_prot_names
Deprecated Parameters
output_file percolator_file search_dimers turbo_button use_comet_xcorr

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