Parameter: predefined_crosslink

Overview

This parameter provides a shortcut to defining all the parameters for analysis of data collected with common crosslinkers. The value of the parameter references a macro table contained at the head of the configuration file. If the macro table is not present, then this parameter will fail. The user can update the macro table to use additional crosslinkers by following the instructions below.

Syntax

[Number]

Version

2.0.0 alpha 22 - present

Example

predefined_crosslink  =  1

Example Macro Table


#
# XL_PARAMS defines pre - configured crosslinker settings.The table can be expanded to suit new crosslinkers.
# This table MUST precede the predefined_crosslink parameter.
# Columns are : [ID Num] [Name] [Quenching Reagent] [Target A] [Target B] [XL Mass] [MonoMasses A] [MonoMasses B] [Cleavage_Product_Masses]
#
[XL_PARAMS]
1   BS3/DSS  NH2       nK  nK  138.068074  155.094629             x	 x
2   BS3/DSS  NH2+H2O   nK  nK  138.068074  155.094629,156.078644  x  x
3   BS3/DSS  Tris      nK  nK  138.068074  259.141973             x  x
4   BS3/DSS  Tris+H2O  nK  nK  138.068074  259.141973,156.078644  x  x
5   DSSO     NH2       nK  nK  158.003765  175.030314             x  54.010565,85.982635,103.993200
6   DSSO     NH2+H2O   nK  nK  158.003765  175.030314,176.014330  x  54.010565,85.982635,103.993200
7   DSSO     Tris      nK  nK  158.003765  279.077658             x  54.010565,85.982635,103.993200
8   DSSO     Tris+H2O  nK  nK  158.003765  279.077658,176.014330  x  54.010565,85.982635,103.993200
9   PhoX     NH2       nK  nK  209.972     226.998                x  x
10  PhoX     NH2+H2O   nK  nK  209.972     226.998,227.982        x  x
[END_XL_PARAMS]